PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G160300.1.p
Common NameSETIT_039882mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB
Protein Properties Length: 364aa    MW: 39026.4 Da    PI: 5.8709
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G160300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.76.6e-19753148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT+eEde l++ vk +G + W++++++++ gR +kqc++rw ++l
  Seita.9G160300.1.p  7 RGPWTEEEDETLKEMVKVYGERKWAAVSQHLP-GRIGKQCRERWTNHL 53
                        89******************************.************996 PP

2Myb_DNA-binding48.81.6e-1564103445
                         S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         WT+ +d  l++a+k +G++ W+ Iar ++ gR+++ +k++w+
  Seita.9G160300.1.p  64 WTENDDIELIKAHKIHGNR-WSMIARQLP-GRSENAVKNHWN 103
                         *******************.*********.***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.365257IPR017930Myb domain
SuperFamilySSF466897.86E-305102IPR009057Homeodomain-like
SMARTSM007173.8E-18655IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-23761IPR009057Homeodomain-like
PfamPF002491.0E-17753IPR001005SANT/Myb domain
CDDcd001676.14E-17953No hitNo description
PROSITE profilePS5129418.27558110IPR017930Myb domain
SMARTSM007171.6E-1360108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-1562107IPR009057Homeodomain-like
CDDcd001673.58E-1264106No hitNo description
PfamPF002491.4E-1264103IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MRPPTLRGPW TEEEDETLKE MVKVYGERKW AAVSQHLPGR IGKQCRERWT NHLRPDIDKA  60
KTIWTENDDI ELIKAHKIHG NRWSMIARQL PGRSENAVKN HWNATKRSLK AKRRLKKKKN  120
AEAPPGQQWS ILEQYIRSLP PAAVAEDGAG AAPQQAPSDD SPPSSYNTGG GYYGGEVVSP  180
PLAPAAAGFD PAALGMYLSA AAGNNPSSAA AAVNLGAMNP DLAPPSYLGL DLNSYYYYGG  240
APLAPAARAP PPQMMMMEQD QQDSSNASNS NNLITYPFVD HMAWQSSSVH ADAYYANNAS  300
AGHYPYYYYG DAAGAGPSGG GGGGGGGDAT AIPDDVDVVQ MASREFQMNP SEDEVTLNLA  360
GFM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-4031053103B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004986358.11e-161PREDICTED: transcription factor MYB98-like
TrEMBLK4ALU70.0K4ALU7_SETIT; Uncharacterized protein
STRINGSi039882m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188233101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09370.15e-38myb domain protein 3r-3